Friday 22.9.2023
WBCB - Workshop on Bioinformatics and Computational Biology
- 20:00-21:00 Travis Gagie: Flexible grammar-based indexes (invited talk)
Framework of the program
| day | 9:00 - 12:30 | 14:00 - 17:00 | since 19:00 |
|---|---|---|---|
| Friday | WBCB | ||
| Saturday | CADM | WBCB | CADM |
| WBCB | WNC | ||
| WNC | |||
| Sunday | IWCIDM | banquet | |
| CADM | |||
| Monday | WAFNL | IWCIDM | |
| IWCIDM |
--->> Conference proceedings (CEUR) <<---
Program
Saturday 23.9.2023
CADM - Computational Aspects of Large-Scale Problems in Discrete Mathematics
- 9:00-10:00 Kolja Knauer: Some problems in Cayley graphs and computational approaches (invited talk)
CADM - Computational Aspects of Large-Scale Problems in Discrete Mathematics (parallel session)
- 10:00-10:25 Petr Kovář and Yifan Zhang: Covering complete graphs using the dancing links algorithm
- 10:25-10:50 Nina Hronkovičová and Martin Mačaj: On geometric siamese color graphs
- 10:50-11:15 coffee break
- 11:15 -11:40 Dominika Mihálová: Constructions of hypergraphical regular representations
- 11:40-12:05 Erik Řehulka and Jozef Rajník: Analysis of colouring properties of proper (2,3)-poles
- 12:05-12:30: György Kiss: Geometric constructions of small regular graphs with girth 5 and 7
WBCB - Workshop on Bioinformatics and Computational Biology (parallel session)
- 10:05-10:25 Andrej Baláž and Alessia Petescia: Prefix-free graphs and suffix array construction in sublinear space
- 10:25-10:45 Adrián Goga, Andrej Baláž, Travis Gagie, Alessia Petescia, Gonzalo Navarro, Simon Heumos and Jouni Sirén: Wheeler maps
- 10:45-11:05 Eva Herencsárová and Broňa Brejová: Identifying Clusters in Graph Representations of Genomes
- 11:05-11:25 coffee break
- 11:25-11:45 Adam Cicherski and Norbert Dojer: de Bruijn graph and variation graph - common axiomatization of pangenome models
- 11:45-12:05 Indu Indu, Jozef Hritz, Václav Brázda, Rajesh Kumar and Krishnendu Bera: In silico designing of Insecticides Against Bemisia tabaci targeting ecdysone receptor
- 12:05-12:25 Krishnendu Bera, Thomas Peter Fellmeth, Alessia Lasorsa, Isabelle Landrieu and Jozef Hritz: Study of conformational changes of Tau(210-240) upon multiple phosphorylations using molecular dynamics simulations
WNC - Workshop on Natural Computing (parallel session)
- 10:05-10:35 Daniel Valenta and Radka Poláková: Two Effective Algorithms Optimize Together
- 10:35-11:05 Šárka Vavrečková - Notes on Relationship of P Colonies to Osmotic Computing and Computer Viruses
- 11:05-11:25 coffee break
- 11:25-11:55 Lucie Ciencialová and Luděk Cienciala: Working with Positive Integers in P Colony rw-Automata
WBCB - Workshop on Bioinformatics and Computational Biology
- 14:00-14:20 Davide Cozzi, Paola Bonizzoni and Luca Denti: ESGq: Alternative Splicing events quantification across conditions based on Event Splicing Graphs
- 14:20-14:40 Vladimír Boža, Eduard Batmendijn, Peter Perešíni, Viktória Hodorová, Hana Lichancová, Rastislav Rabatin, Broňa Brejová, Jozef Nosek and Tomáš Vinař: Precise Nanopore Signal Modeling Improves Unsupervised Single-Molecule Methylation Detection
- 14:40-15:00 Janik Sielemann, Katharina Sielemann, Broňa Brejová, Tomáš Vinař and Cedric Chauve: Using Graph Neural Networks to Detect Plasmid Contigs from an Assembly Graph
- 15:00-15:20 Krisztian Buza, Kamil Książek, Wilhelm Masarczyk, Przemysław Głomb, Piotr Gorczyca and Magdalena Piegza: A Simple and Effective Classifier for the Detection of Schizophrenia and Bipolar Disorder based on Heart Rate Variability Time Series
- 15:20-15:50 coffee break
- 15:50-16:10 Jakub Horváth and Matej Lexa: Analysis and classification of long terminal repeat sequences from plant LTR-retrotransposons
- 16:10-16:30 Matej Lexa and Hedi Hegyi: Alternatives to classical HiC data analysis
- 16:30-16:50 Pavel Jedlička, Ivan Vanát, Matej Lexa, Marie Krátká and Eduard Kejnovský: TE-greedy-nester: a tool for reconstruction of transposable elements in plant genomes
- 16:50-17:10 Marie Krátká, Pavel Jedlička, Zdeněk Kubát and Eduard Kejnovský: Evolutionary Dynamics of LTR Retrotransposons in Holocentric Plants from Juncaceae Family
CADM - Computational Aspects of Large-Scale Problems in Discrete Mathematics
- 19:00-20:00 Primož Šparl: When theoretical results and computer power join forces (invited talk)
WNC - Workshop on Natural Computing
- 20:15-21:15 Orellana Martín: Parallel virus machines (invited talk)
Sunday 24.9.2023
IWCIDM - Computational Intelligence and Data Mining
- 9:00-10:00 Carola Doerr: Benchmarking Iterative Optimization Heuristics with IOHprofiler (invited talk)
IWCIDM - Computational Intelligence and Data Mining (parallel session)
- 10:05-10:35 Florian Beck, Johannes Fürnkranz and Van Quoc Phuong Huynh: Generalizing conjunctive and disjunctive rule learning to learning m-of-n concepts
- 10:35-11:05 Vojtech Outrata, Jaroslav Hlaváč and Martin Kopp: Behavioural classification of network devices using graph structure of private networks
- 11:05-11:25 coffee break
- 11:25-11:55 Martin Vejbora and Elena Šikudová: Creating 3D Diorama from Single Image with Deep Learning
- 11:55-12:25 Zoltán Szoplák, Abdulwahed Almarimi, Asmaa Salem and Gabriela Andrejková: Anomaly detection in texts using sentence embeddings
CADM - Computational Aspects of Large-Scale Problems in Discrete Mathematics (parallel session)
- 10:05-10:30 Valter Cingel, Matúš Gál and Tatiana Jajcayova: Partial symmetries and symmetry levels of graphs - A census
- 10:30-10:55 Mónica Reyes, Cristina Dalfó and Miquel Angel Fiol: On the spectra and spectral radii of token graphs
- 10:55 - 11:15 Coffee Break
- 11:15-11:40 Edita Máčajová and Jozef Rajník: Cyclic connectivity and multipoles
- 11:40-12:05 Leonard Chidiebere Eze, Robert Jajcay and Dominika Mihálová: An algorithmic approach to determining spectra of orders of (k,g)-graphs
- 12:05-12:30 Martin Bachratý: Effective approach for finding skew morphisms of cyclic groups
Monday 25.9.2023
WAFNL - Workshop on Automata, Formal and Natural Languages
WAFNL - Workshop on Automata, Formal and Natural Languages (parallel session)
- 10:05-10:30 Zoltán Szoplák, Šimon Horvát, Dávid Varga, Peter Gurský, Stanislav Krajči and Ľubomír Antoni: Extraction of Legal References from Court Decisions
- 10:30-10:55 Jozef Kubík, Daniel Kyselica and Martin Takáč: Efficient fine-tuning of SlovakBERT with Epinet
- 10:55-11:15 Markéta Lopatková and Václava Ketnerová: Inherently Reciprocal Predicates - Do They Exist At All?
- 11:15-11:30 coffee break
- 11:30-11:55 František Mráz, Martin Plátek, Dana Pardubská and Daniel Průša: One-side Pumping and Two-side Pumping by Complete CF(¢,$)-grammars
- 11:55-12:20 Andrej Perković, Jernej Vičič, Dávid Javorský and Ondřej Bojar: Shortening of the results of machine translation using paraphrasing dataset
- 12:20-12:40 Markéta Lopatková, Jaroslava Hlaváčová and Jiří Mírovský: Linking Two Lexical Resources: VALLEX and MorfFlex Lexicons
IWCIDM - Computational Intelligence and Data Mining (parallel session)
- 11:00-11:30 Zakaria Salmi and José Luis Seixas Junior: Data Augmentation for Pseudo-Time Series Using Generative Adversarial Networks
- 11:30-12:00 Arzu Tosayeva, Ermiyas Birihanu and Tsegaye Misikir Tashu: Pattern Recognition and Context Prediction of COVID-19 cases in European Countries
- 12:00-12:30 Pavel Procházka, Michal Mareš and Marek Dědič: Which Graph Properties Affect GNN Performance for a Given Downstream Task?
IWCIDM - Computational Intelligence and Data Mining
- 19:00-19:30 Iveta Mrázová and Marek Behún: Graph Neural Networks for Hotel Recommendation and Quality Assessment
- 19:30-20:00 Jiří Kubík and Jan Faigl: Dynamic Model Learning in Leg Contact Detection using Position Feedback Only
- 20:00-20:30 Jiří Tumpach, Jan Koza and Martin Holeňa: Improving Optimization with Gaussian Processes in the Covariance Matrix Adaptation Evolution Strategy