Friday 26.9.2025
WBCB - Workshop on Bioinformatics and Computational Biology
- 19:00-20:00 Fereydoun Hormozdiari: Computational and machine learning methods to study genomics of diseases (invited talk)
Program (in progress)
| day | 9:00 - 12:30 | 13:30 - 14:20 | since 19:00 |
|---|---|---|---|
| Friday 26.9.2025 |
WBCB | ||
| Saturday 27.9.2025 |
WBCB | IWCIDM | |
| WNC | |||
| Sunday 28.9.2025 |
WAS | WAS | banquet |
| WBCB | |||
| WNC | |||
| Monday 29.9.2025 |
WAFNL | WAFNL | |
| IWCIDM | IWCIDM |
Saturday 27.9.2025
WBCB - Workshop on Bioinformatics and Computational Biology
- 9:00-9:30 Jakub Drobný and Broňa Brejová: Local Enrichment of Genomic Annotations (long)
- 9:30-10:00 Luca Denti and Yoshihiro Shibuya: Weighted de novo clustering of third-generation transcriptomic datasets (long)
- 10:00-10:20 Matej Lexa, Jakub Horváth, Pavel Jedlička, Marie Krátká, Zdeněk Kubát and Eduard Kejnovský: Lessons from applying explainable machine learning to a collection of plant long terminal repeat (LTR) sequences (short)
- 10:20-10:45 coffee break
- 10:45-11:15 Martin Senderák and Tomáš Vinař: Seeing Through Hairballs: Simplifying Pangenome Graphs (long)
- 11:15-11:35 Simone Ciccolella and Luca Denti: Novel computational methods for Alternative Splicing analysis through Deep Learning and Pangenomes (short)
- 11:35-11:45 break
- 11:45-12:05 Prajna Hebbar, Sergio Zavala and Benedict Paten: Pangenome Annotation Toolkit: A tool for annotation transfer through pangenome graphs and building pantranscriptomes (short)
- 12:05-12:25 Tomáš Pavlík and Monika Čechová: Predictive models for explaining the variable of interest using genomic annotations (short)
IWCIDM - Computational Intelligence and Data Mining
- 19:00-20:00 Dirk Arnold: 60 Years of Evolution Strategies in 60 Minutes (invited talk)
WNC - Workshop on Natural Computing
- 20:10-21:10 Marian Gheorghe: Kernel P systems and connections with membrane systems (invited talk)
Sunday 28.9.2025
WAS - Workshop on Applied Security
- 9:00-10:00 Eugen Antal: From Ink to Algorithms: AI-Powered Processing and Cryptanalysis of Historical Ciphers (invited talk)
WAS - Workshop on Applied Security (parallel session)
- 10:00-10:25 Dušan Bernát and Matúš Bucher: Overview of reverse shell techniques
- 10:25-10:50 Ľubomír Antoni, Pavol Sokol, Sophia Petra Krišáková, Dominika Kotlárová, Ondrej Krídlo and Stanislav Krajči: Formal concept analysis and attribute dependencies of NIST data leakage case
- 10:50-11:15 Filip Tuch and Richard Ostertág: Reconstruction of the image captured by TempestSDR
- 11:15-11:30 coffee break
- 11:30-11:55 Vanda Matušíková, Eva Marková, Rastislav Krivoš-Belluš and Sophia Petra Krišáková: Identification of Malicious Slovak Domains Using Machine Learning
- 11:55-12:20 Martin Stanek: Bad cipher design: Chessography and Cascaded Spin Shuffle
WBCB - Workshop on Bioinformatics and Computational Biology (parallel session)
- 10:05-10:35 Jan Kotrs and Matej Lexa: bafiq: BAM Flag Index Query tool for faster repeated queries of mapped reads (long)
- 10:35-11:05 Xénia Richnáková, Viktória Hodorová and Jiří Hladůvka: Brightfield Cell Segmentation Without Labels or Learning (long)
- 11:05-11:25 coffee break
- 11:25-11:45 Luca Denti, Paola Bonizzoni, Broňa Brejová, Rayan Chikhi, Thomas Krannich, Tomas Vinar and Fereydoun Hormozdiari: Pangenome graph augmentation from unassembled long reads (short)
- 11:45-12:05 Adam Cicherski, Anna Lisiecka and Norbert Dojer: AlfaPang: High-Speed, Low-Memory Pangenome Graphs Without Alignments (short)
- 12:05-12:25 Davide Cesare Monti, Paola Bonizzoni, Gianluca Della Vedova, Benedict Paten, Brian Riccardi, Raffaella Rizzi and Jouni Siren: Recombination detection in sequence to graph alignment (short)
WNC - Workshop on Natural Computing (parallel session)
- 10:00-12:30 workshop section (TBA)
WAS - Workshop on Applied Security
- 13:30-13:55 Zuzana Hennelová, Pavol Sokol, Tomáš Bajtoš and Sophia Petra Krišáková: Data-driven digital forensics: anomaly detection in Mozilla Firefox
- 13:55-14:20 Richard Ostertág and Martin Stanek: Impact of cybersecurity incidents on stock prices
Monday 29.9.2025
WAFNL - Workshop on Automata, Formal and Natural Languages
WAFNL - Workshop on Automata, Formal and Natural Languages (parallel session)
- 10:10-10:40 Zoltán Szoplák, Peter Gurský, Dávid Varga, Šimon Horvát and Stanislav Krajči: Automated Construction of Legal Terminology Thesaurus
- 10:40-11:10 Sofija Kochovska, Branko Kavšek and Jernej Vičič: Rule-Based Sentiment Analysis of Macedonian
- 11:10-11:25 coffee break
- 11:25-11:55 Tomáš Sourada and Jana Straková: Corpus Frequencies in Morphological Inflection: Do They Matter?
- 11:55-12:25 Marketa Lopatkova, Hana Hledikova, Jan Štěpánek and Daniel Zeman: From the Prague Dependency Treebank to Uniform Meaning Representation: Evaluating a Partial Automatic Conversion
IWCIDM - Computational Intelligence and Data Mining (parallel session)
- 10:10-10:35 Michal Barnišin and Lubomír Popelínský: Neurosymbolic Learning with Random Forest
- 10:35-11:00 Peter Guba and Jakub Gemrot: Comparison of Monte Carlo Tree Search Variants
- 11:00-11:15 coffee break
- 11:15-11:40 Martin Bača and Šimon Horvát: Design of Transformer-Based QA Systems for Logistic Data
- 11:40-12:05 Petra Vidnerová and Roman Neruda: Network Text Analysis Framework for Mapping Research Trends: A Neural Architecture Search Case Study
- 12:05-12:30 Richard Staňa and Bianka Szepesiová: Precipitation and Cloud Forecasting Using Radar Data and Encoder-Decoder Convolutional LSTM
WAFNL - Workshop on Automata, Formal and Natural Languages (parallel session)
- 19:00-19:30 Jana Kostičová: LR Parsing of Permutation Phrases
- 19:30-20:00 František Mráz, Dana Pardubska, Martin Platek, Martin Prochazka and Marta Vomlelová : Complete CF(¢,$)-grammars, Pumping Reductions, and Regularity
- 20:05-20:35 Yvo Ad Meeres and František Mráz: A Unifying Approach to Picture Automata
- 20:35-21:05 An open session talk and discussion
IWCIDM - Computational Intelligence and Data Mining (parallel session)
- 19:00-19:25 Barbora Ľapinová, Ľubomír Antoni and Šimon Horvát: Isolated Sign Language Recognition Using Deep Learning
- 19:25-19:50 Diellor Hoxhaj, Jan Hric and Iveta Mrazova: Factors that Impact Success in Higher Education: Analysis of Educational Data
- 19:50-20:15 Theodor Ladin, Lukáš Korel and Martin Holeňa: Lightweighted textual embeddings using graph convolutional networks for sentence similarity recognition
- 20:15-20:40 Vojtěch Bláha and Jan Blažek: Deep Segmentation of Fuel Rod End Plugs for Nuclear Assembly Inspection
- 20:40-21:05 Pavel Prochazka and Daniil Buchko: A Practical Guide to Method Selection for Feature-Poor Bipartite Graphs: From Traditional Baselines to Graph Neural Networks